The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.
pdb.ligand
Local identifiers in PDB ligand should match this
regular expression:
^[A-Za-z0-9]+$
Compact URIs (CURIEs) constructed from PDB ligand should match
this regular expression:
^pdb\.ligand:[A-Za-z0-9]+$
A summary of the relations in the Bioregistry schema can be found here.
The following resources share a URI format string with pdb.ligand
:
pdb-ccd
When generating an extended prefix map, their respective CURIE prefixes and URI
prefixes are merged into the record for pdb.ligand
.
If you believe that these are distinct semantic spaces and should not be merged,
please open a new issue on the Bioregistry issue tracker
for discussion.
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 4 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
PDB.LIGAND
|
|
Identifiers.org
![]() |
miriam |
pdb.ligand
|
|
N2T
![]() |
n2t |
pdb.ligand
|
|
Pathguide
![]() |
pathguide |
169
|
|
Prefix Commons
|
prefixcommons |
pdbligand
|
|
Wikidata
|
wikidata |
P3636
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier TRQ
is used to demonstrate the providers
available for PDB ligand. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
|
PDB Ligand at Protein Databank in Europe (PDBe) | https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/TRQ |
bio2rdf |
Bio2RDF | http://bio2rdf.org/pdbligand:TRQ |