The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.
uniprot.isoform
Local identifiers in UniProt Isoform should match this
regular expression:
^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$
Compact URIs (CURIEs) constructed from UniProt Isoform should match
this regular expression:
^uniprot\.isoform:([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$
A summary of the relations in the Bioregistry schema can be found here.
bfo:0000050
)
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
UNIPROT.ISOFORM
|
|
Biolink
|
biolink |
UNIPROT.ISOFORM
|
|
Identifiers.org
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miriam |
uniprot.isoform
|
|
N2T
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n2t |
uniprot.isoform
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier Q5BJF6-3
is used to demonstrate the providers
available for UniProt Isoform. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
|
UniProt Isoform through Universal Protein Resource using Persistent URL system | http://purl.uniprot.org/uniprot/Q5BJF6-3 |
|
UniProt Isoform through UniParc | http://www.uniprot.org/uniparc/?query=Q5BJF6-3 |
obo.1 |
Nonstandard OBO PURL | http://purl.obolibrary.org/obo/UniProtKB_Q5BJF6-3 |